Giovannoni Lab Publications

Moore, E.R., Weaver, A.J., Davis, E.W., Giovannoni, S.J., and Halsey, K.H. 2022. Metabolism of key atmospheric volatile organic compounds by the marine heterotrophic bacterium Pelagibacter HTCC1062 (SAR11). Nov 29. 24(1):212-222. doi: 10.1111/1462-2920.15837. PMID: 34845812

Xue, C., Xie, Z.X., Li, Y.Y., Chen, X.H., Sun, G., Lin, L., Giovannoni, S.J., and Wang, D.Z. 2021. Polysaccharide utilization by a marine heterotrophic bacterium from the SAR92 clade. FEMS Microbiol. Ecol.97(9):fiab120.

Giovannoni, S.J., Chan, F., Davis, E.W., Deutsch, C., and Wolf, S.S. 2021. Biochemical barriers on the path to ocean anoxia? BioRxiv. doi.org/10.1101/2021.05.17.444596.

Noell, S.E., Barrell, G.E., Suffridge, C., Morre, J., Gable, K.P., Graff, J.R., VerWey, B.J., Hellweger, F.L. and Giovannoni, S.J. 2021. SAR11 cells rely on enzyme multifunctionality to transport and metabolize a range of polyamine compounds. BioRxiv. doi.org/10.1101/2021.05.13.444117.

Bolaños, L.M., Choi, C.J., Worden, A.Z., Baetge, N., Carlson, C.A. and Giovannoni, S.J. 2021. Seasonality of the microbial community composition in the North Atlantic. Frontiers in Mar. Sci. 8:23.

Kim, S., Kang, I., Lee, J.W., Jeon, C.O., Giovannoni, S.J. and Cho, J.C. 2021. Heme auxotrophy in abundant aquatic microbial lineages. bioRxiv. doi.org/10.1101/2021.01.11.426183

Suffridge, C.P., Bolaños, L.M., Bergauer, K., Worden, A.Z., and Morre, J. 2021. Exploring vitamin B1 cycling and its connections to the microbial community in the North Atlantic. Frontiers in Mar. Sci. 7:1115.

David-Martin, C.L., Giovannoni, S.J., Behrenfeld, M.J., Penta, W.B., and Halsey, K.G. 2021. Seasonal and spatial variability in the biogenic production and consumption of volatile organic compounds (VOCs) by marine plankton in the North Atlantic Ocean. Frontiers in Mar. Sci. doi.org/10.3389/fmars.2020.611870.
Bolaños, L.M., Karp-Boss. L., Choi. C.J., Worden, A.Z., Graff, J.R., Haëntjens, N., Chase, A.P., Della Penna, A., Gaube, P., Morison, F., Menden-Deuer, S., Westberry, T.K., O'Malley, R.T., Boss, E., Behrenfeld, M.J., and Giovannoni, S.J. 2020. Small phytoplankton dominate western North Atlantic biomass. ISME J. 14(7):1663-1674. doi: 10.1038/s41396-020-0636-0. Epub 2020 Mar 30. PMID: 32231247
Lee, C.P., Halsey, K. and Giovannoni, S.J. 2020. Effects of As: P ratios on co-cultures of a green alga and SAR11 bacteria. Ocean Sciences Meeting 2020.
Moore, E.R., Davie-Martin, C.L., Giovannoni, S.J. and Halsey, K.H. 2020. Pelagibacter metabolism of diatom-derived volatile organic compounds imposes an energetic tax on photosynthetic carbon fixation. Environ Microbiol. 2019 Nov 18. doi: 10.1111/1462-2920.14861
Saw, J.H.W., Nunoura, T., Hirai, M., Takaki, Y., Parsons, R., Michelsen, M., Longnecker, K., Kujawinski, E.B., Stepanauskas, R., Landry, Z., Carlson, C.A. and Giovannoni, S.J. 2020. Pangenomics analysis reveals diversification of enzyme families and niche specialization in globally abundant SAR202 bacteria. mBio. 11(1): pii:e02975-19.

Noell, S.E. and Giovannoni, S.J. 2019. SAR11 bacteria have a high affinity and multifunctional glycine betaine transporter. Environ. Microbiol. 21(7):2559-2575.
Giovannoni, S.J., Halsey, K.H., Saw, J., Muslin, O., Suffridge, C., Sun, J., Lee, C-P., Moore, E.R., Temperton, B., and Noell, S.E. 2019. A parasitic arsenic cycle that shuttles energy from phytoplankton to heterotrophic bacterioplankton. mBio, DOI:10.1128/MbIO.00246-19.
Behrenfeld, M.J., Moore, R.H., Hostetler, C.A., Graff, J., Gaube, P., Russell, L., Chen, G., Doney, S.C., Giovannoni, S., Liu, H., Proctor, C., Bolanos, L., Huynh, N., Davie-Martin, C., Westberry, T., Bates, T.S., Bell, T.G., Bidle, K.D., Boss, E.S., Brooks, S.D., Cairns, B., Carlson, C., Halsey, K., et al. 2019. The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES) Science Motive and Mission Overview. Front. Mar. Sci. 6(122).
White, A.E., Giovannoni, S.J., Zhao, Y., Vergin, K., and Carlson, C.A. 2018. Elemental content and stoichiometry of SAR11 chemoheterotrophic marine bacteria. Limnol. and Oceanogr. Letts. https://doi.org/10.5061/dryad.1749362/2.
Zhao, Y., Qin, F., Zhang, R., Giovannoni, S.J., Zhang, Z., Sun, J., Du, S., and Rensing, C. 2018. Pelagiphages in the Podoviridae family integrate into host genomes. Environ. Microbiol. doi:10.1111/1462-2920.14487.
Sun, J., Mausz, M., Chen, Y. and Giovannoni, S.J. 2018. Microbial trimethylamine metabolism in marine environments. Environ. Microbiol. doi:10.1111/1462-2920.14461.
Landry, Z., Vergin, K., Mannenbach, C., Block, S., Yang, Q., Blainey, P., and Giovannoni, S.J. 2018. Optofluidic single-cell genome amplification of sub-micron bacteria in the ocean subsurface. Frontiers in Microbiol. (https://doi.org/10.3389/fmicb.2018.01152).
Gutowska, M.A., Shome, B., Sudek, S., McRose, D.L., Hamilton, M., Giovannoni, S.J., Begley, T.P., and Worden, A.Z. 2017. Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than Thiamin. MBio. Oct 10;8(5).
Halsey, K.H., Giovannoni, S., Graus, M., Zhao, Y., Landry, Z., Thrash, J.C. and de Gouw, J. 2017. Biological cycling of volatile organic carbon by phytoplankton and bacterioplankton. Limnol. and Oceanogr. doi:10.1002/Ino.10596.
Landry, Z., Swan, B.K., Herndl, G.J., Stepanauskas, R. and Giovannoni, S.J. 2017. SAR202 Genomes from the dark ocean predict pathways for the oxidation of recalcitrant dissolved organic matter. MBio. 8(2):pii e00413-17.
Vergin, K.L., Jhirad, N., Dodge, J., Carlson, C.A. and Giovannoni, S.J. 2017. Marine bacterioplankton consortia follow deterministic, non-neutral community assembly rules. Aquat. Microb. Ecol. 10:3354/ame01824.
Zhao, X., Schwartz, C.L., Pierson, J. Giovannoni, S.J., McIntosh, J.R. and Nicastro, D. 2017. Three-dimensional structure of the ultraoligotrophic marine bacterium "Candidatus Pelagibacter ubique." 2017. Appl. Environ. Microbiol. 83(3):pii:e02807-16.
Choi, C.J., Bachy, C., Jaeger, G.S., Poirier, C., Sudek, L., Sarma, V.V., Mahadevan, A., Giovannoni, S.J., and Worden, A.Z. 2017. Newly discovered deep-branching marine plastid lineages are numerically rare but globally distributed. Curr Biol. 2017 Jan 9;27(1):R15-R16.
Smith, D.P., Nicora, C.D., Lipton, M.S., Carini, P., Smith, R.D., and Giovannoni, S.J. 2016. Proteome remodeling in response to sulfur limitation in CandidatusPelagibacter ubique. mSystems. Jul 12;1(4). pii: e00068-16.
Giovannoni, S.J. 2016. SAR11 Bacteria: The Most Abundant Plankton in the Oceans. Ann Rev Mar Sci. [Epub ahead of print] PMID: 27687974.
Sun, J., Todd, J.D., Thrash, J.C., Qian, M., Temperton, B., Guo, J., Fowler, E.K., Aldrich, J., De Leenheer, P., Payne, S.H., Johnston, A.W.B., Davie-Martin, C.L., Halsey, K.H., and Giovannoni, S.J. 2016. The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol. Nature Microbiol. doi:10.1038/nmicrobiol.2016.65.
Glass, J.B., Kretz, C.B., Ganesh, S., Ranjan, P., Seston, S.L., Buck, K.N., Landing, W.M., Morton, P.L., Moffett, J.W., Giovannoni, S.J., Vergin, K.L. and Stewart, F.J. 2015. Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen mimimum zones. Front Microbiol. 6:998.
Carini, P., Van Mooy, B.A.S., Thrash, J.C., White, A.E., Zhao, Y., Campbell, E.O., Fredricks, H., and Giovannoni, S.J. 2015. SAR11 lipid renovation in response to phosphorus starvation. Proc. Natl. Acad. Sci., 112(25):7767-72.
Worden, A.Z., Follows, M.J., Giovannoni, S.J., Wilken, S., Zimmerman, A.E., and Keeling, P.J. 2015. R ethinking the marine carbon cycle: factoring in multifarious lifestyles of microbes. Science 347 DOI: 10.1126/Science.1257594.
Carini, P., White, A.E., Campbell, E.O., Giovannoni, S.J. 2014. Methane production by phosphate-starved SAR11 chemoheterotrophic marine bacteria. Nat. Commun. 5:4346.
Parsons, R. J., Nelson, C. E., Carlson, C. A., Denman, C. C., Andersson, A. J., Kledzik, A. L., Vergin, K. L., McNally, S. P., Treusch, A. H., and Giovannoni, S. J. 2014. Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil's Hole, Bermuda. Environ. Microb. doi:10.1111/1462-2920.12445.
Giovannoni, S.J., J.C. Thrash, and B. Temperton. 2014. Implications of streamlining theory for microbial ecology. ISME J. doi:10.1038/ismej.2014.60.
Giovannoni, S.J. and Nemergut, D. 2014. Microbes ride the current. Science 345:1246. DOI 10.1126/science.1259467.
Giovannoni, S.J., Vergin, K.L., and Carlson, C.A. 2014. Twenty-five years of omics at BATS. OCB Ocean Carbon and Biogeochem. News, 7:1-5.
Carini, P., Campbell, E. O., Morré, J. Sañudo-Wilhelmy, S. A., Thrash, J. C., Bennett, S. E, Temperton, B., Begley, T. and Giovannoni, S. J. 2014. Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea. ISME J. doi:10.1038/ismej.2014.61. Additional tar files.
Thrash, J. C., Temperton, B., Swan, B. K., Landry, Z. C., Woyke, T., DeLong, E. F., Stepanauskas, R., and Giovannoni, S. J. 2014. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. ISME J. doi: 10.1038/ismej.2013.243 Supplemental data file 1, Supplemental data file 2, Supplemental data file 3, Readme.
Landry, Z.C., Giovannoni, S.J., quake, S.R., Blainey, P.C. 2013. Optofluidic cell selection from complex microbial communities for single-genome analysis. Methods Enzymol. 531:69-90.
Ferla, M.P., Thrash, J.C., and Giovannoni, S.J. 2013. New rRNA gene-based phylogenies of the alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability. PLOS ONE 8:12.
Smith, D. P., Thrash, J. C., Nicora, C. D., Lipton, M. S., Burnum-Johnson, K. E., Carini, P., Smith, R. D., and Giovannoni, S. J. 2013. Proteomic and transcriptomic analyses of “Candidatus Pelagibacter ubique” describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium. mBio 4:e00133-12; doi: 10.1128/mBio.00133-12.
Vergin, K. L., Done, B., Carlson, C. A., and Giovannoni, S. J. 2013. Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean. Aquatic Microb. Ecol. 71:1-13. doi:10.3354/ame01661.
Vergin, K. L., Beszteri, B., Monier, A., Thrash, J. C., Temperton, B., Treusch, A. H., Kilpert, F., Worden, A. Z., and Giovannoni, S. J. 2013. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. ISME J. 7:1322-32. doi:10.1038/ismej.2013.32. Link to PhyloAssigner.
Zhao, Y., Temperton, B., Thrash, J. C., Schwalbach, M. S., Vergin, K. L., Landry, Z. C., Ellisman, M., Deerinck, T., Sullivan, M. B., and Giovannoni, S. J. 2013. Abundant SAR11 viruses in the ocean. Nature 494:357-60. doi:10.1038/nature11921 Supplemental data file 1, Supplemental data file 2, Supplemental data file 3, Readme
Carini, P., Steindler, L., Beszteri, S., and Giovannoni, S. J. 2012. Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium. ISME J. 7:592-602. doi:10.1038/ismej.2012.122.
Grote, J.*, Thrash, J. C.*, Huggett, M. J., Landry, Z. C., Carini, P., Giovannoni, S. J., Rappé, M. S. 2012. Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade. mBio 3(5):e00252-12. doi:10.1128/mBio.00252-12 (* co-first authorship). Use Internet Explorer or Safari to download Supplemental material and Genome sequence data.
Temperton, B. and Giovannoni, S. J. 2012. Metagenomics: microbial diversity through a scratched lens. Curr. Opin. Microbiol. 15:605-12. doi:10.1016/j.mib.2012.07.001
Giovannoni, S. J. 2012. Vitamins in the Sea. PNAS 109:13888-9. doi:10.1073/pnas.1211722109.
Giovannoni, S. J. and Vergin, K. L. 2012. Seasonality in ocean microbial communities. Science 335 (6069): 671-6. doi:10.1126/science.1198078 Abstract, Reprint, Full text.
Halsey, K. H., Carter, A. E., Giovannoni, S. J. 2011. Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181. Environ. Microb. 14: 630-40. doi:10.1111/j.1462-2920.2011.02605.x.
Treusch, A. H., Demir-Hilton, E., Vergin, K. L., Worden, A. Z., Carlson, C. A., Donatz, M. G., Burton, R. M., Giovannoni, S. J. 2011. Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids.ISME J.6:481–492. doi:10.1038/ismej.2011.117.
Sun, J., Steindler, L., Thrash, J. C., Halsey, K. H., Smith, D. P., Carter, A. E., Landry, Z. C., Giovannoni, S. J. 2011. One carbon metabolism in SAR11 pelagic marine bacteria. PLoS ONE 6(8): e23973. doi:10.1371/journal.pone.0023973
Bertagnolli, A. D., Treusch, A. H., Mason, O. U., Stingl, U., Vergin, K. L., Chan, F., Beszteri, B., Giovannoni, S. J. 2011. Bacterial diversity in the bottom boundary layer of the intercontinental shelf of Oregon, USA. Aq. Microb. Ecol. 64:15-25. doi:10.3354/ame01504
Thrash, J. C., Boyd, A., Huggett, M. J., Grote, J., Carini, P., Yoder, R. J., Robbertse, B., Spatafora, J. W., Rappé, M. S., Giovannoni, S. J. 2011. Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Sci. Reports. 1:13. doi: 10.1038/srep00013
Steindler, L., Schwalbach, M. S., Smith, D. P., Chan, F., Giovannoni, S. J. 2011. Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. PLoS ONE. 6(5):e19725. DOI: 10.1371/journal.pone.0019725.
Wang, L., Chen, S., Vergin, K. L., Giovannoni, S.J., Chan, S. W., DeMott, M. S., Taghizadeh, K., Cordero, O. X., Cutler, M., Timberlake, S., Alm, E. J., Polz, M., Pinhassi, J., Deng, Z., Dedon, P. C. 2011. DNA phosphorothioation is widespread and quantized in bacterial genomes. PNAS. 108(7): 2963-8. doi:10.1073/PNAS.1017261108
Thrash, J. C., Cho, J.-C., Bertagnolli, A. D., Ferriera, S., Johnson, J., Vergin, K. L., and Giovannoni, S. J. 2011. Genome sequence of the marine Janibacter sp. strain HTCC2649. J. Bac. 193(2): 584-5. doi:10.1128/JB.01298-10
Kang, I., Vergin, K. L., Oh, H.-M., Choi, A., Giovannoni, S. J. and Cho, J.-C. 2011. Genome sequence of strain HTCC2083, a novel member of the marine Roseobacter clade. J. Bacteriol.193(1): 319-320.
Oh, H.-M., Kang, I., Vergin, K. L., Lee, K., Giovannoni, S. J., and Cho, J.-C. 2011. Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea. J. Bacteriol. 193(1): 317-318.
Oh, H.-M., Kang, I., Vergin, K. L., Kang, D., Rhee, K.-H., Giovannoni, S. J. and Cho, J.-C. 2011. Complete genome sequence of strain HTCC2503^Tof Parvularcula bermudensis, the type species of the order ‘Parvularculales’ in the Alphaproteobacteria. J. Bacteriol. 193(1): 305-306.
Oh, H.-M., Kang, I., Yang, S.-J., Jang, Y., Vergin, K. L., Giovannoni, S. J., and Cho, J.-C. 2011. Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.J. Bacteriol.193(1): 303-304.
Sowell, S. M., P. E. Abraham, M. Shah, N. C. Verberkmoes, D. F. Barofsky, S. J. Giovanonni. 2010. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J. doi:10.1038/ismej.2010.168
Mason, O. U., Nakagawa, T., Rosner, M., Van Nostrand, J. D., Zhou, J., Maruyama, A., Fisk, M. R., Giovannoni, S. J. 2010. First Investigation of the Microbiology of the Deepest Layer of Ocean Crust. PLoS ONE. 5(11):e15399. DOI: 10.1371/journal.pone.0015399
Kido Soule, M. C., Longnecker, K., Giovannoni, S.J., Kujawinski, E. B. 2010. Impact of instrument and experiment parameters on reproducibility of ultrahigh resolution ESI FT-ICR mass spectra of natural organic matter. Org. Geochem. 41:725-33.
Kang, I., Oh, H.-M., Vergin, K. L., Giovannoni, S. J., and Cho, J.-C. 2010. Genome sequence of the marine Alphaproteobacterium HTCC2150, assigned to the Roseobacter clade. J. Bacteriol.192(23): 6315-6316.
Thrash, J. C., Cho, J.-C., Ferriera, S., Johnson, J., Vergin, K. L., and Giovannoni, S. J. 2010. Genome sequences of Pelagibaca bermudensis HTCC2601^T and Maritimibacter alkaliphilus HTCC2654^T, the type strains of two marine Roseobacter genera. J. Bac. 192(20): 5552-5553.
Kang, I., Oh, H.-M., Lim, S.-I., Ferriera, S., Giovannoni, S. J., and Cho, J.-C. 2010. Genome Sequence of Fulvimarina pelagi HTCC2506^T, a Mn(II)-Oxidizing Alphaproteobacterium Possessing an Aerobic Anoxygenic Photosynthetic Gene Cluster and Xanthorhodopsin. J. Bacteriol. 192(18): 4798-4799.
Oh, H.-M., I. Kang, S. Ferriera, S. J. Giovannoni, and J.-C. Cho. 2010. Complete genome sequence of Croceibacter atlanticus HTCC2559^T. J. Bacteriol. 192(18): 4796-4797.
Oh, H.-M., I. Kang, S. Ferriera, S. J. Giovannoni, and J.-C. Cho. 2010. Genome sequence of the oligotrophic marine gammaproteobacterium HTCC2143 isolated from the Oregon Coast. J. Bacteriol. 192(17): 4530-4531.
Thrash, J. C., Cho, J.-C., Ferriera, S., Johnson, J., Vergin, K. L., and Giovannoni, S. J. 2010. Genome sequences of strains HTCC2148 and HTCC2080 belonging to the OM60/NOR5 clade of the Gammaproteobacteria. J. Bac. 192(14): 3842-3843.
Thrash, J. C., Stingl, U., Cho, J.-C., Ferriera, S., Johnson, J., Vergin, K. L., and Giovannoni, S. J. 2010. Genome sequence of the novel marine Gammaproteobacterium strain HTCC5015. J. Bac. 192(14): 3838-3839.
Thrash, J. C., Cho, J.-C., Vergin, K. L., Giovannoni, S. J. 2010. The genome sequences of Oceanicola granulosus HTCC2516^T and O. batsensis HTCC2597^T. J. Bacteriol. 192 (13): 3549-50. doi:10.1128/JB.00412-10.
Smith, D. P., Kitner, J. B., Norbeck, A. D., Clauss, T. R., Lipton, M. S., Schwalbach, M. S., Steindler, L., Nicora, C. D., Smith, R. D., Giovannoni, S. J. 2010. Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus Pelagibacter ubique. PLoS ONE 5(5):e10487. doi:10.1371/journal.pone.0010487.
Thrash, J. C., Cho, J.-C., Vergin, K. L., Morris, R. M., Giovannoni, S. J. 2010. Genome sequence of Lentisphaera araneosa HTCC2155^T, the type species of the order Lentisphaerales in the phylum Lentisphaerae. J. Bacteriol. 192 (11): 2938-9. doi:10.1128/JB.00208-10.
Beszteri, B., Temperton, B., Frickenhaus, S., Giovannoni, S. J. 2010. Average genome size: a potential source of bias in comparative metagenomics. ISME J. 4:1075-7. doi:10.1038/ismej.2010.29
Schwalbach, M. S., Tripp, H. J., Steindler, L., Smith, D. P., Giovannoni, S. J. 2009. The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Env. Microb. 12:490-500. DOI: 10.1111/j.1462-2920.2009.02092.x
Oh, H.-M., Giovannoni, S. J., Lee, K., Ferriera, S., Johnson, J., Cho J.-C. 2009. Complete genome sequence of Robiginitalea biformata HTCC2501. J. Bac. 191:7144-5. doi:10.1128/JB.01191-09.
Meyer, M. M., Ames, T. D., Smith, D. P., Weinberg, Z., Schwalbach, M. S., Giovannoni, S. J., Breaker, R. R. 2009. Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. BMC Genom. 10:268. doi:10.1186/1471-2164-10-268.
Treusch, A. H., Vergin, K. L., Finlay, L. A., Donatz, M. G., Burton, R. M., Carlson, C. A., Giovannoni, S. J. 2009. Seasonality and vertical structure of microbial communities in an ocean gyre.ISME J. 3:1148-63. doi:10.1038/ismej.2009.60.
Kujawinski, E. B., Longnecker, K., Blough, N. V., Del Vecchio, R., Finlay, L., Kitner, J. B., Giovannoni, S. J. 2009. Identification of possible source markers in marine dissolved organic matter using ultrahigh resolution electrospray ionization Fourier-transform ion cyclotron resonance mass spectrometry. Geochim. et Cosmochim. Acta. 73:4384-99. doi:10.1016/j.gca.2009.04.033.
Oh, H.-M., Giovannoni, S. J., Ferriera, S., Johnson, J., Cho J.-C. 2009. Complete genome sequence of Erythrobacter litoralis HTCC2594. J. Bac. 191:2419-20. doi:10.1128/JB.00026-09.
Tripp, H. J., Schwalbach, M. S., Meyer, M. M., Kitner, J. B., Breaker, R. R., Giovannoni, S. J. 2009. Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11. Environ. Microb. 11:230-8. doi:10.1111/j.1462-2920.2008.01758.x.
Sowell, S. M., Norbeck, A. D., Lipton, M. S., Nicora, C. D., Callister, S. J., Smith, R. D., Barofsky, D. F., Giovannoni, S. J. 2008. Proteomic analysis of stationary phase in the marine bacterium “Candidatus Pelagibacter ubique.” Appl. Environ. Microbiol. 74: 4091–4100. doi:10.1128/AEM.00599-08.
Carlson, C. A., Morris, R., Parsons, R., Treusch, A. H., Giovannoni, S. J., Vergin, K. 2008. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J. 3:283-95. doi:10.1038/ismej.2008.117.
Mason, O. U., Di Meo-Savoie, C. A., Van Nostrand, J. D., Zhou, J., Fisk, M. R., Giovannoni, S. J. 2008. Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. ISME J.3:231-42. doi:10.1038/ismej.2008.92.
Sowell, S.M., Wilhelm, L.J., Norbeck, A.D., Lipton, M.S., Nicora, C.D., Barofsky, D.F., Carlson, C.A., Smith, R.D., Giovannoni, S. J. 2008. Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea. ISME J.3:93-105. doi:10.1038/ismej.2008.83.
Giovannoni, S. J., Hayakawa, D. H., Tripp, H. J., Stingl, U., Givan, S. A., Cho, J.-C., Oh, H.-M., Kitner, J. B., Vergin, K. L., Rappé, M. S., 2008. The small genome of an abundant coastal ocean methylotroph. Env. Microb. 10:1771-82. doi:10.1111/j.1462-2920.2008.01598.x.
Tripp, H. J., Kitner, J. B., Schwalbach, M. S., Dacey, J. W. H., Wilhelm, L. J., Giovannoni, S. J. 2008. SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature, 452:741-4. Guava Easy-Cyte cell counting method.
Desiderio, R. A., Laney, S. R., Letelier, R. M., Giovannoni, S. J. 2007. Using lasers to probe the transient light absorption by proteorhodopsin in marine bacterioplankton. Appl. Opt. 46(29):7329-36.
Urbach, E., Vergin, K. L., Larson, G. L., Giovannoni, S. J. 2007. Bacterioplankton communities of Crater Lake, OR: dynamic changes with euphotic zone food web structure and stable deep water populations. Hydrobiologia 574:161-77.
Wilhelm, L. J., Tripp, H. J., Givan, S. A., Smith, D. P., Giovannoni, S. J. 2007. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol. Direct. 2:27. doi:10.1186/1745-6150-2-27.
Giovannoni, S. J., Stingl, U. 2007. The importance of culturing bacterioplankton in the 'omics' age. Nature Rev. Microb. 5:820-6.
Lee, K., Choo, Y.-J., Giovannoni, S. J., Cho, J.-C. 2007. Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales. Int. J. Syst. Evol. Microbiol. 57:1653-8.
Stingl, U., Cho, J.-C., Foo, W., Vergin, K. L., Lanoil, B., Giovannoni, S. J. 2007. Dilution-to-extinction culturing of psychrotolerant planktonic bacteria from permanently ice-covered lakes in the McMurdo Dry Valleys, Antarctica. Microb. Ecol. 55(3):395-405.
Stingl, U., Tripp, H. J., Giovannoni, S. J. 2007. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J. 1:361-71.
Mason, O. U., Stingl, U., Wilhelm, L. J., Moeseneder, M. M., Di Meo-Savoie, C. A., Fisk, M. R., Giovannoni, S. J. 2007. The phylogeny of endolithic microbes associated with marine basalts. Env. Microbiol. 9 (10): 2539-50.
Vergin, K. L., Tripp, H. J., Wilhelm, L. J., Denver, D. R., Rappé, M. S., Giovannoni, S. J. 2007. High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11). Env. Microbiol. 9 (10): 2430-40.
Cho, J.-C., Stapels, M. D., Morris, R. M., Vergin, K. L., Schwalbach, M. S., Givan, S. A., Barofsky, D. F., Giovannoni, S. J.. 2007. Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Env. Microbiol. 9(6):1456-63.
Stingl, U., Desiderio, R. A., Cho, J.-C., Vergin, K. L., Giovannoni, S. J. 2007. The SAR92 clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl. Env. Microbiol. 73:2290-6.
Lee, K., Choo, Y.-J., Giovannoni, S. J., Cho, J.-C. 2007. Ruegeria pelagia sp. nov., isolated from the Sargasso Sea, Atlantic Ocean. Int. J. Syst. Evol. Microbiol. 57:1815-8.
Choi, D. H., Cho, J.-C., Lanoil, B. D., Giovannoni, S. J., Cho, B. C. 2007. Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade. Int. J. Syst. Evol. Microbiol. 57:270-5.
Morris, R. M., Longnecker, K., Giovannoni, S. J. 2006. Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom. Environ. Microbiol. 8(8):1361-70.
Cho, J.-C., and S. J. Giovannoni. 2006. Pelagibaca bermudensis gen. nov., sp. nov., a novel marine bacterium within the Roseobacter clade in the order 'Rhodobacterales'. Int. J. Syst. Evol. Microbiol. 56:855-9.
Giovannoni, S.J., Bibbs, L., Cho, J.-C., Stapels, M.D., Desiderio, R., Vergin, K.L., Rappé, M.S., Laney, S., Wilhelm, L.J., Tripp, H.J., Mathur, E.J., Barofsky, D.F. 2005. Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature. 483:82-5.
Morris, R.M., Vergin, K.L, Cho, J.-C., Rappé, M.S., Carlson, C.A., Giovannoni, S.J. 2005. Temporal and Spatial Response of Bacterial Lineages to Annual Convective Overturn at the Bermuda Atlantic Time-series Study Site. Limnol. Oceanog. 50(5):1687-96.
Stingl, U. and Giovannoni, S. J. 2005. Molecular Diversity and Ecology of Microbial Plankton. Nature. 437:343-8.
Giovannoni, S.J.,Tripp, H.J., Givan, S., Podar, M., Vergin, K.L., Baptista, D., Bibbs, L., Eads, J., Richardson, T.H., Noordewier, M., Rappé, M.S., Short, J., Carrington, J.C., and Mathur, E.J. 2005. Genome Streamlining in a Cosmopolitan Oceanic Bacterium. Science 309:1242-5.
Connon, S.A., Tovanabootr, A., Dolan, M., Vergin, K., Giovannoni, S. J., and Semprini, L. 2005. Bacterial Community Composition Determined by Culture-Independent and -Dependent Methods During Propane-Stimulated Bioremediation in Trichloroethene-Contaminated Groundwater. Environ. Microb. 7(2):165-178.
Page, K. A., Connon, S.A., and Giovannoni, S. J. 2004 Representative Freshwater Bacterioplankton Isolated from Crater Lake, Oregon. Appl. and Environ. Microb. (11):6542-6550.
Stapels, M.D., Cho, J.-C., Giovannoni, S. J., and Barofsky, D.F. 2004. Proteomic Analysis of Novel Marine Bacteria Using MALDI and ESI Mass Spectrometry. J. of Biomolec. Tech. 15:191-8.
Morris, R. M., Rappé, M. S., Urbach, E., Connon, S. A., and Giovannoni, S. J. 2004. Prevalence of the Chloroflexi-Related SAR202 Bacterioplankton Cluster throughout the Mesopelagic Zone and Deep Ocean. Appl. and Environ. Microb. 70(5):2836-2842.
Cho, J.-C., and S. J. Giovannoni. 2004. Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-ß-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'. Int. J. Syst. Evol. Microbiol. 54:1129-36.
Cho, J.-C., and S. J. Giovannoni. 2004. Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int. J. Syst. Evol. Microbiol. 54:1101-6.
Cho, J. C., Vergin, K. L., Morris, R. M., and Giovannoni, S. J. 2004. Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum,Lentisphaerae. Environ. Microbiol. 6(6):611-21.
Cho, J. C. and Giovannoni, S. J. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70 (1):432-440.
Carlson, C. A., Giovannoni, S. J., Hansell, D. A., Goldberg, S. J., Parsons, R., Vergin, K. 2004. Interactions Between DOC, Microbial Processes, and Community Structure in the Mesopelagic Zone of the Northwestern Sargasso Sea. Limnol. Oceanog. 49:1073-83.
Cho, J. C. and Giovannoni, S. J. 2003. Fulvimarina pelagi gen. nov., sp. nov., a marine bacterium that forms a deep evolutionary lineage of descent in the order 'Rhizobiales.' Int. J. Syst. Evol. Microbiol. 53: 1853-1859.
Cho, J. C. and Giovannoni, S. J. 2003. Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst. App. Microbiol. 26:76-83.
Cho, J. C. and Giovannoni, S. J. 2003.Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha Proteobacteria. Int. J. Syst. Evol. Microbiol. 53:1031-1036.
Cowen, J., Giovannoni, S. J., Johnson, H. P., Kenig, F., Butterfield, D., Rappé, M. S., Hutnak, M., and Lam, P. 2003. Fluids from aging ocean crust that support microbial life. Science 299:120-123.
Morris, R. M., Rappé, M. S., Connon, S. A., Vergin, K. L., Siebold, W. A., Carlson, C. A., and Giovannoni, S. J. 2002. SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420:806-810.
Rappé, M. S., Connan, S. A., Vergin, K. L., and Giovannoni, S. J. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-631.
Carlson, C. A., Giovannoni, S. J., Hansell, D. A., Goldberg, S. J., Parsons, R., Otero, M. P., Vergin, K., and Wheeler, B. R. 2002. Effect of nutrient amendments on bacterioplankton, community structure, and DOC utilization in the northwestern Sargasso Sea. Aquatic Microbial Ecology 30:19-36.
Connon, S. A. and Giovannoni, S. J. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885.
Vergin, K. L., Rappé, M. S., and Giovannoni, S. J. 2001. Streamlined method to analyze 16S rRNA gene clone libraries. Biotechniques 30:938-944.
Urbach, E., Vergin, K. L., Young, L., Morse, A., Larson, G. L., and Giovannoni, S. J. 2001. Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake.(abstract) Limnol. Oceanog. 46:557-572.
Lanoil, B. D., Carlson, C. A., and Giovannoni, S. J. 2000. Bacterial chromosomal painting for in situ monitoring of cultured marine bacteria. Environ. Microbiol. 2:654-665.
Rappé, M. S., Vergin, K. L., and Giovannoni, S. J. 2000. Phylogenetic comparison of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microb. Ecol. 33:219-232.
Gordon, D. A., Priscu, J., and Giovannoni, S. J. 2000. Origin and phylogeny of microbes living in permanent Antarctic lake ice. Microb. Ecol. 39:197-202.
Boyd, P. W., Sherry, N. D., Berges, J. A., Bishop, J. K. B., Calvert, S. E., Charette, M. A., Giovannoni, S. J., Goldblatt, R., Harrison, P. J., Boran, S.B., Roy, S., Soon, M., Strom, S., Thibault, D., Vergin, K. L., Whitney, F. A., and Wong, C. S. 1999. Transformations of biogenic particulates from the pelagic to the deep ocean realm. Deep Sea Res. II: Top. Stud. in Oceanog. 46:2761-92.
Janson, S., Bergman, B., Carpenter, E. J., Giovannoni, S. J., and Vergin, K. L. 1999. Genetic Analysis of the Marine Diazotrophic cyanobacterium Trichodesmium. FEMS Microb. Ecol. 39:57-65.
Fisk, M. R. and Giovannoni, S. J. 1999. Sufficient conditions for a deep biosphere on Mars. Journal of Geophysical Research, Planets. 104:11805-11815.
Urbach, E., Vergin, K. L, and Giovannoni, S. J. 1999. Immunochemical detection and isolation of DNA from metabolically active bacteria. Appl. Environ. Microbiol. 65:1207-1213.
McAshan, S. K., Vergin, K. L., Giovannoni, S. J., and Thaler, D. S. 1999. Interspecies hybridization in the Enterococci via conjugation of chromosomal vancomycin resistance. Microb. Drug Resis. 5:101-112.
Mauel, M. J., Giovannoni, S. J., and Fryer, J. L. 1999. Phylogenetic analysis of Piscirickettsia salmonis isolates by 16S ribosome DNA sequencing. Dis. Aquat. Org. 35:115-123.
Rappé, M. S., Gordon, D. A., Vergin, K. L., and Giovannoni, S. J. 1999. Phylogeny of Actinobacteria-related SSU rRNA gene clones recovered from marine bacterioplankton. Sys. Appl. Microbiol. 22:106-112.
Suzuki, M., Rappé, M. S., and Giovannoni, S. J. 1998. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit(SSU) rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64:4522-4529.
Fisk, M. R., Giovannoni, S. J., and Thorseth, I. 1998. Alteration of oceanic volcanic glass: textural evidence of microbial activity. Science 281:978-980.
Vergin, K. L., Urbach, E., Stein, J. L., Delong, E. F., Lanoil, B. D., and Giovannoni, S. J. 1998. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl. Environ. Microbiol. 64:3075-3078.
Urbach, E., Schindler, C., and Giovannoni, S. J. 1998. A PCR fingerprinting technique to distinguish isolates of Lactococcus lactis. FEMS Microbiol. Let. 162:111-115.
Rappé, M. S., Suzuki, M. T., Vergin, K. L., and Giovannoni, S. J. 1998. Phylogenetic diversity of ultraplankton plastid small-subunit(SSU) rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States. Appl. Environ. Microbiol. 64:294-303.
Priscu, J. C., Fritsen, C. H., Adams, E. E., Giovannoni, S. J., Paerl, H. W., McKay, C. P., Gordon, D. A., Lanoil, B. D., and Pinckney, J. L. 1998. Perennial Antarctic lake ice: an oasis for life in a polar desert. Science 280:2095-2098.
Wright, T. D., Vergin, K. L., Boyd, P. W., and Giovannoni, S. J. 1997. A novel delta-subdivision Proteobacterial lineage from the lower ocean surface layer. Appl. Environ. Microbiol. 63:1441-1448.
Lanoil, B. D. and Giovannoni, S. J. 1997. Identification of bacterial cells by chromosomal painting. Appl. Environ. Microbiol. 63:1118-1123
Suzuki, M. T., Rappé, M. S., Haimberger, Z. W., Winfield, H., Adair, N., Ströbel, J., and Giovannoni, S. J. 1997. Bacterial diversity among SSU rRNA gene clones and cellular isolates from the same seawater sample. Appl. Environ. Microbiol. 63:983-989.
Urbach, E., Daniels, B., Salama M. S., Sandine, W. E., and Giovannoni, S. J. 1997. The ldh phylogeny for environmental isolates of Lactococcus lactis is consistent with the rRNA genotypes but not with phenotypes. Appl. Environ. Microbiol. 63:694-702.
Field, K. G., Gordon, D., Wright, T., Rappé, M., Urbach, E., Vergin, K., and Giovannoni S. J. 1997. Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl. Environ. Microbiol. 63:63-70.
Rappé, M. S., Kemp, P. F., and Giovannoni S. J. 1997. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, N. C.Limnol. Oceanog. 42:811-826.
Mauel, M. J., Giovannoni, S. J., and Fryer, J. L. 1997. Development of polymerase chain reaction assays for detection, identification and differentiation of Piscirickettsia salmonis. Dis. Aquat. Org. 26:189-195.
Lanoil, B. D, Ciufetti, L. M, and Giovannnoni, S. J. 1996. The marine bacterium Pseudoalteromonas haloplanktis has a complex genome structure composed of two separate genetic units. Genome Res. 6:1160-1169.
Giovannnoni, S. J., Rappé, M. S., Vergin, K. L., and Adair, N. 1996. 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria. Proc. Natl. Acad. Sci. U.S.A. 93:7979-7984.
Gordon, D. A. and Giovannoni, S. J. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62:1171-1177.
Suzuki, M. T. and Giovannoni, S. J. 1996. Bias caused by template annealing in the amplication of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
Giovannoni, S. J., Fisk, M. R., and Furnes, H. 1996. Genetic evidence for endolithic microbial life colonizing basaltic glass/seawater interfaces. Proceedings of the Ocean Drilling Program 148:207-214.
Rappé, M. S., Kemp, P. F., and Giovannoni, S. J. 1995. Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater. J. Phycol. 31:979-988.
Salama, M. S., Musafija-Jeknic, T., Sandine, W. E., and Giovannoni, S. J. 1995. An ecological study of lactic acid bacteria: isolation of new strains of Lactococcus including Lactococcus lactis subspecies cremoris. Journal of Dairy Science 78:1-14.
Salama, M. S., Sandine, W. E., and Giovannoni, S. J. 1995. A milk-based method for detecting antimicrobial substances produced by lactic acid bacteria. J. Dairy Sci. 78:1219-1223.
Mullins, T. D., Britschgi, T. B., Krest, R. L., Giovannoni, S. J. 1995. Genetic comparisons reveal the same unknown lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanog. 40:148-158.
Salama, M. S., Sandine, W. E., and Giovannoni, S. J. 1993. Isolation of lactococcus lactis subsp. cremoris from nature by colony hybridization with rRNA probes. Appl. Environ. Microbiol. 59:3941-3945.
Lovley, D. R., Giovannoni, S. J., White, D. C., Champine, J. E., Phillips, E., Gorby, Y. A., and Goodwin, S. 1993. Geobacter metallireducens gen. nov. sp.nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Archive Microbiol. 159:336-344.
Cary, S. C. and Giovannoni, S. J. 1993. Transovarial inheritance of endosymbiotic bacteria in deep-sea vesicomyid clams. Proc. Natl. Acad. Sci. U.S.A. 90:5659-5699.
Cary, S. C., Warren, W., Anderson, E., and Giovannoni, S. J. 1993. Identification and localization of bacterial endosymbionts in hydrothermal vent taxa with symbiont-specific PCR amplication and in situ hybridization techniques. Mol. Mar. Biol. Biotech. 2:251-262.
Liesack, W., Soller, R., Stewart, T., Haas, H., Giovannoni, S. J., and Stackebrandt, E. 1992. The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees-intrafamily relationships and the phylogenetic position of the Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences. System. Appl. Microbiol. 15:357-362.
Lane, D. J., Harrison, Jr., A. P., Stahl, D., Pace, B., Giovannoni, S. J., Olsen, G. J., and Pace N. R. 1992. Evolutionary relationships among sulfur- and iron-oxidizing eubacteria. J. Bacteriol. 174(1):269-278.
Fryer, J. L., Lannan, C. N., Giovannoni, S. J., and Wood, N. D. 1992. Picsirickettsia salmonis gen. nov., sp. Nov., the causative agent of an epizootic disease in salmonid fishes. Int. J. Sys. Bacteriol. 42:120-126.
Field, K. G., Landfear, S. M., and Giovannoni, S. J. 1991. 18S rRNA sequences of Leishmania enrietti promastigote and amastigote. International Journal for Parasitology 21:483-485.
Britschgi, T. B. and Giovannoni, S. J. 1991. Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing. Appl. Environ. Microbiol. 57:1707-1713.
Salama, S., Sandine, W., and Giovannoni, S. J. 1991. Development and application of oligonucleotide probes for identification of Lactococcus lactis subsp. cremoris. Appl. Environ. Microbiol. 57:1313-1318.
Gutenberger, S. K., Giovannoni, S. J., Field, K. G., Fryer, J. L., and Rohovec, J. S. 1991. Phyogenetic comparison of the 16S and rRNA sequence of the fish pathogen, Renibacterium salmoninarum, to Gram-positive bacteria. FEMS Microbiol. Let. 77:151-156.
Giovannoni, S. J., Delong, E. F., Schmidt, T. M., and Pace, N. R. 1990. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl. Environ. Microbiol. 56:2572-2575.
Giovannoni, S. J., Britschgi, T. B., Moyer, C. L., and Field, K. G. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345:60-63.
Huss, A. R. and Giovannoni, S. J. 1989. Primary structure of the chloroplast small subunit ribosomal RNA gene from Chlorella vulgaris. Nucleic Acids Res. 22:9487
Turner, S., Burger-Wiersma, T., Giovannoni, S. J., Mur, L. R., and Pace, N. R. 1989. The relationship of a prochlorophyte, Prochlorothrix hollandica, to green chloroplasts. Nature 337:380-382.
Weisburg, W. G., Giovannoni, S. J., and Woese, C. R. 1989. The Deinococcus Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. System. Appl. Microbiol. 11:128-134.
Bomar, D., Giovannoni, S. J., and Stackbrandt, E. 1988. A unique type of eubacterial 5S rRNA in members of the order Planctomycetales. J. Mol. Evol. 27:121-125.
Distel, D. L., Lane, D. L., Olsen, G. J., Giovannoni, S. J., Pace, B., Pace, N., Stahl, D., and Felbeck, H. 1988. Sulfur-oxidizing bacterial endosymbionts: Analysis of phylogeny and specificity by 16S rRNA sequences. J. Bacteriol. 170:2506-2510.
Field, K. G., Olsen, G. J., Lane, D. J., Giovannoni, S. J., Ghiselin, M. T., Raff, E. C., Pace, N. R., and Raff R. A. 1988. Molecular phylogeny of the animal kingdom based on 18S ribosomal RNA sequences. Science 239:748-753.
Giovannoni, S. J., Delong, E., Olsen, G. J., and Pace, N. R. 1988. Phylogenetic group-specific oligodeoxynucleotide probes for in situ microbial identification. J. Bacteriol. 170:720-726.
Giovannoni, S. J., Turner, S., Olsen, G. T, Barns S., Lane, D. T., and Pace, N. R. 1988. Evolutionary relationships among cyanobacteria and green chloroplasts. J. Bacteriol. 170:3584-3592.
Karl, D. M., Taylor, G. T., Novitski, J. A., Jannasch, H. W., Wirsen, C. O., Pace, N. R., Lane, D. J., Olsen, G. J., and Giovannoni, S. J. 1988. A microbiological study of Guymas basin high temperature hydrothermal vents. J. Deep Sea Res. 35:777-791.
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